RIKEN Center for Biosystems Dynamics Research, Laboratory for Morphogenetic Signaling (Hayashi Lab.)

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ImageJ Plugins

Registration plugin for HyperStack

Registration for the stack image along the time axis

Main function:

  • Registration by several methods
  • Manual alignment
  • Projection with range specification
  • Cross section view
  • Load and Export the file type of mq(.ixo) *coordinate only

Example:

Basic function sample: trachea, fusion cell registration

Update log:

~ update 20190905 ~

  • Some fixes

~ update 20190724 ~

  • Fixed the problem that cross section image is not displayed in specific image

~ update 20190403 ~

  • Code correction due to behavior change of ImageJ 1.52n or later

~ update 20190107 ~

  • Fix the problems in combining numbers into tables due to sub-pixelation

~ update 20180913 ~

  • Fix the problem of cross section view due to sub-pixelation

~ update 20180613 ~

  • Improved to handle subpixel
  • *For this reason, it is necessary to be careful because the movement of the image when setting the sub-pixel uses the complement value

~ update 20170921 ~

  • Freeze phenomenon occurred when moving the T-axis quickly due to the previous update -> This problem was solved

~ update 20170920 ~

  • Solved the phenomenon that some operations become unstable in MacOS Sierra
  • *There is a possibility to instability on operating systems prior to Sierra.

~ update 20161209 ~

  • Change the file name from CoordinateShiftHyper to CoordinateShift.
  • Change the name of some UI

~ version up! 20160729 ~

  • Add range specification function in projection

~ update! 20160218 ~

  • Eliminate the problems with Make Orthogonal

~ version up! 20160202 ~

  • Refactoring
  • Supported only java1.8 because of optimization
  • Add shift method (phase only correlation method) * code only

~ update! 20150701 ~

  • Enhance collaboration with Orthogonal image
  • Stabilization of Orthogonal image(fix the problem that default LUT value appears for a moment)

~ update! 20150514 ~

  • Changed LUT settings to be “R”, “G”, “B” when using a 24-bit image (RGB image)

~ update! 20150507 ~

  • Fixed the problem that occurs when using single channel in OrthogonalImage.

~ version up! 20150501 ~

  • Added the function to export the original image and the combined image of Orthogonal Image
  • Added Export ixo function
  • *Supports only coordinate information

~ update 20150430 ~

  • Improvement of operation at the time of Orthogonal image display
  • *mprove stability and brightness adjustment problems

~ version up! 20150428 ~

  • Improvement the View Orthogonal Image
  • Display multiple channels
  • Supports composite image

~ version up! 20150416 ~

  • Add View Orthogonal Image function (display X-Z, Y-Z image)
  • When ROI is set, only that area is displayed.
  • Limited to display of selected channels only.
  • Calculation is not performed when not displayed.

~ version up! 20150304 ~

  • Add a Backward shift checkbox(*process from the end of the stack image)

~ version up! 20150303 ~

  • The waiting time was reduced by performing post-drag processing in the background.
  • Add abort function to interrupt processing

~ version up! 20150225 ~

  • Significantly reduce memory usage!
  • Reduce memory leaks and become more secure for continuous use by review of the design

~ version up! 20150113 ~

  • Add local registration function using ROI
  • Add checkbox to allow overwriting of shift amount

~ version up! 20150109 ~

  • Add the fast method
  • Rearrange the position of UI button